Microbial landscape and keratinophilic properties of skin microbiota of healthy youth in Astana

Main Article Content

Yelena Kukhar

S. Seifullin Kazakh Agrotechnical Research University, Astana, Kazakhstan.

kucharev@mail.ru

Aliya Baiduisenova

NJS «Astana Medical University», Astana, Kazakhstan.

alyia@mail.ru

Gulshat Bailina

S. Seifullin Kazakh Agrotechnical Research University, Astana, Kazakhstan.

gulshat_010@mail.ru

Gulmereke Kozhakhmetova

NJS «Astana Medical University», Astana, Kazakhstan.

kozhakhmetova.gk@bk.ru

Arseniy Grivastov

NJS «Astana Medical University», Astana, Kazakhstan.

arseniyt101@gmail.com

Abstract

The skin microbiome is very diverse. Fungi are a mandatory part of it. The biological role of non-dermatophytic keratinolytic saprophytic fungi is in the decomposition of keratinized skin debris and its appendages in the soil. Non-dermatophytickeratinophils inhabiting human skin may be potential causative agents of opportunistic skin mycoses, making the findings relevant. The aim of the study was to study the microbial landscape of the skin of the hands of adolescents among schoolchildren and students and the keratinophilic properties identified by micromycetes. The object of the study were 43 healthy adolescents aged 12 to 18 years, from whom samples of biomaterial were taken. The health status of young people with physical inactivity, vitamin deficiencies, cases of acute respiratory viral infections and acute respiratory infections was studied by questionnaires. A high rate of carriage of all representatives of pathogens of skin mycosis was established in school-age boys with prevalence of mold (61.5%) and yeast (66.7%) fungi. Among students, carriers of classical dermatophytes were mainly girls (80.0%), mold and yeast fungi - mainly young men (64.0%). A total of 35 isolates were isolated, 13 species of fungi were identified to the genus: Penicillium spp. (11%), T. rubrum (11%), Alternaria spp. (6%), T. mentagrophytes (8%), T. verrucosum (6%), A. niger (9%), A. flavus (3%), M. сanis (3%), Ch. globosum (3%), A. pullulans (3%), Cladosporium spp. (3%) and others. The study of keratinophilic properties of micromycetes isolated from adolescents showed their presence in 71.4% of strains. The keratinophilic properties of micromycetes were confirmed by abundant mycelial growth, active spore formation, and accumulation of spores both on the surface of the cuticle (ectothrix) and in the thickness of the hair (endothrix), which were detected by microscopy.

Keywords:
human skin microbiome, skin mycoses, spectrum, keratinophilicity, keratinophiles

Article Details

Received 2026-07-03
Accepted 2026-09-08
Published 2026-09-09

References

Antoniuk A. The microbial composition of the skin is unique and relatively stable // Ukrainian Medical Journal. – 2016. – P. 36–39.

Grice E.A., Segre J.A. The skin microbiome // Nature Reviews Microbiology. – 2011. – Vol. 9(4). – P. 244–253. https://doi.org/10.1038/nrmicro2537

Rosenthal M., Goldberg D., Aiello A., Larson E., Foxman B. Skin microbiota: Microbial community structure and its potential association with health and disease // Infection, Genetics and Evolution. – 2011. – Vol. 11(5). – P. 839–848. https://doi.org/10.1016/j.meegid.2011.03.022

Lykov I.N., Shestakova G.A. Microorganisms: Biology and Ecology. – Kaluga: SerNa, 2014.

Skowron K., Bauza-Kaszewska J., Kraszewska Z., Wiktorczyk-Kapischke N., Grudlewska-Buda K., Kwiecińska-Piróg J., Gospodarek-Komkowska E. Human skin microbiome: Impact of intrinsic and extrinsic factors on skin microbiota // Microorganisms. – 2021. – Vol. 9(3). https://doi.org/10.3390/microorganisms9030543

Oh J., Byrd A.L., Park M., Kong H.H., Segre J.A. Temporal stability of the human skin microbiome // Cell. – 2016. – Vol. 165(4). – P. 854–866. https://doi.org/10.1016/j.cell.2016.04.008

Kerk S.K., Lai H.Y., Sze S.K., Ng K.W., Schmidtchen A., Adav S.S. Bacteria display differential growth and adhesion characteristics on human hair shafts // Frontiers in Microbiology. – 2018. – Vol. 9. https://doi.org/10.3389/fmicb.2018.02145

Zhou H., Shi L., Ren Y., Tan X., Liu W., Liu Z. Applications of human skin microbiota in the cutaneous disorders for ecology-based therapy // Frontiers in Cellular and Infection Microbiology. – 2020. – Vol. 10. https://doi.org/10.3389/fcimb.2020.570261

Adamczyk K., Garncarczyk A., Antończak P., Wcisło-Dziadecka D. The foot microbiome // Journal of Cosmetic Dermatology. – 2020. – Vol. 19. – P. 1039–1043. https://doi.org/10.1111/jocd.13368

McCall L.I., Callewaert C., Zhu Q., Song S.J., Bouslimani A., Minich J.J., et al. Home chemical and microbial transitions across urbanization // Nature Microbiology. – 2020. – Vol. 5. – P. 108–115. https://doi.org/10.1038/s41564-019-0593-4

Cundell A.M. Microbial ecology of the human skin // Microbial Ecology. – 2018. – Vol. 76. – P. 113–120. https://doi.org/10.1007/s00248-016-0789-6

Edmonds-Wilson S.L., Nurinova N.I., Zapka C.A., et al. Review of human hand microbiome research // Journal of Dermatological Science. – 2015. – Vol. 80(1). – P. 3–12. https://doi.org/10.1016/j.jdermsci.2015.07.006

Cheng J., Hata T. Dysbiosis of the skin microbiome in atopic dermatitis // Skin Microbiome Handbook: From Basic Research to Product Development / Ed. by N. Dayan. – 1st ed. – Scrivener Publishing LLC, 2020.

Gallo R.L. Human skin is the largest epithelial surface for interaction with microbes // Journal of Investigative Dermatology. – 2017. – Vol. 137(6). – P. 1213–1214. https://doi.org/10.1016/j.jid.2017.02.001

Roth R.R., James W.D. Microbial ecology of the skin // Annual Review of Microbiology. – 1988. – Vol. 42. – P. 441–464.

Peleg A.Y., Hogan D.A., Mylonakis E. Medically important bacterial-fungal interactions // Nature Reviews Microbiology. – 2010. – Vol. 8(5). – P. 340–349. https://doi.org/10.1038/nrmicro2313

Trinh P., Zaneveld J.R., Safranek S., Rabinowitz P.P. One Health relationships between human, animal, and environmental microbiomes: A mini-review // Frontiers in Public Health. – 2018. – Vol. 6. – Article 235. https://doi.org/10.3389/fpubh.2018.00235

Kemter A.M., Nagler C.R. Influences on allergic mechanisms through gut, lung, and skin microbiome exposures // Journal of Clinical Investigation. – 2019. – Vol. 129(4). – P. 1483–1492. https://doi.org/10.1172/JCI124610

Khismatulina I.M., Fayzullina E.V. Features of the microbial landscape of the skin of patients with facial dermatoses // Problems of Medical Mycology. – 2020. – Vol. 22(3). – P. 142.

Khan B.V., Seytkhanova B.T. Microbiological landscape in children and adolescents with COVID-19 // Innovations in Medicine and Pharmaceutics. – 2021. – P. 305–308.

Kemaikin V.M., Tabynbaev N.B., Khudaibergenova M.S., Olifirovich A.A., Abdrakhmanova L.M., Klimko N.N. Prevalence of severe and chronic mycotic diseases in the Republic of Kazakhstan // Problems of Medical Mycology. – 2016. – Vol. 4. – P. 14–15.

A New Word in the Treatment of Mycosis // Pharmaceutical Bulletin. – 2018. – Vol. 38(951). – P. 20.

Kashkin P.N. Dermatomycoses. – Leningrad, 1953.

Sarkisov A.Kh., Nikiforov L.I. Specific prevention of trichophytosis of fur animals // Bulletin of VIEV. – 1972. – Vol. 42. – P. 32.

Litvinov A.M. Dermatophytosis of cats and dogs (prevention and treatment) // Veterinary Science. – 2000. – Vol. 11. – P. 51–53.

Segal E., Elad D. Human and zoonotic dermatophytoses: Epidemiological aspects // Frontiers in Microbiology. – 2021. – Vol. 12. https://doi.org/10.3389/fmicb.2021.713532

Dworecka-Kaszak B., Biegańska M.J., Dąbrowska I. Occurrence of various pathogenic and opportunistic fungi in skin diseases of domestic animals: A retrospective study // BMC Veterinary Research. – 2020. – Vol. 16(1). – Article 248. https://doi.org/10.1186/s12917-020-02460-x

de Hoog G.S., Dukik K., Monod M., Packeu A., Stubbe D., Hendrickx M., et al. Toward a novel multilocus phylogenetic taxonomy for the dermatophytes // Mycopathologia. – 2017. – Vol. 182. – P. 5–31. https://doi.org/10.1007/s11046-016-0073-9

Young A. Ringworm in horses (dermatophytosis) // UC Davis Veterinary Medicine Center for Equine Health. – 2022. – P. 31.

Cafarchia C., Figueredo L.A., Otranto D. Fungal diseases of horses // Veterinary Microbiology. – 2013. – Vol. 167(1–2). – P. 215–234. https://doi.org/10.1016/j.vetmic.2013.01.015

Kidd S.E., Weldhagen G.F. Diagnosis of dermatophytes: From microscopy to direct PCR // Microbiology Australia. – 2022. – Vol. 43(1). – P. 9–13. https://doi.org/10.1071/MA22005

Gurung S.K., Adhikari M., Kim S.W., et al. Discovery of two Chrysosporium species with keratinolytic activity from field soil in Korea // Mycobiology. – 2018. – Vol. 46(3). – P. 260–268. https://doi.org/10.1080/12298093.2018.1514732

Mitola G., Escalona F., Salas R., García E., Ledesma A. Morphological characterization of in vitro human hair keratinolysis produced by identified wild strains of Chrysosporium species // Mycopathologia. – 2002. – Vol. 156(3). – P. 163–169. https://doi.org/10.1023/A:1023340826584

Rudenko A.V., Voloshchuk E.M., Glukhenkiy B.T. Component composition of mycotic associations detected in patients with onychomycosis // Advances in Medical Mycology. – 2005. – Vol. 6. – P. 7–9.

Ajello L., Georg L.K., Kaplan W., Kaufman L. Laboratory Manual for Medical Mycology. – Atlanta: U.S. Department of Health, Education and Welfare, Public Health Service, Communicable Disease Center, 1966.

Robert R., Pihet M. Conventional methods for the diagnosis of dermatophytosis // Mycopathologia. – 2008. – Vol. 166(5–6). – P. 295–306. https://doi.org/10.1007/s11046-008-9106-3

Kidd S., Halliday C., Alexiou H., Ellis D. Descriptions of Medical Fungi. – 3rd ed. – Adelaide: National Mycology Reference Centre, 2016. – P. 54–62.

Sutton D., Fothergill A., Rinaldi M. The Determinant of Pathogenic and Conditionally Pathogenic Fungi. – Moscow: Mir, 2001. – P. 486.

Uakhit R., Smagulova A., Kukhar E., Bailina G. Development of DNA isolation methods to study dermatomycosis // Eurasian Journal of Applied Biotechnology. – 2025. – Vol. 4. – P. 112–117. https://doi.org/10.11134/btp.4.2025.13

Wen L., Duffy A. Factors influencing the gut microbiota, inflammation, and type 2 diabetes // Journal of Nutrition. – 2017. – Vol. 147(7). – P. 1468S–1475S. https://doi.org/10.3945/jn.116.240754

Lehninger A.L. Principles of Biochemistry. – 4th ed. – Vol. 1. – New York: Worth Publishers, 1985. – P. 126–127.

McKittrick J., Chen P.Y., Bodde S.G., Yang W., Novitskaya E.E., Meyers M.A. The structure, functions, and mechanical properties of keratin // JOM. – 2012. – Vol. 64(4). – P. 449–468. https://doi.org/10.1007/s11837-012-0302-8

Muhammad A.Y., Amonov M., Baig A.A., Alvi F.J. Gut microbiome: An intersection between human genome, diet, and epigenetics // Advanced Gut & Microbiome Research. – 2024. – Vol. 2024. – P. 44–47. https://doi.org/10.1155/2024/6707728

Most read articles by the same author(s)